{"id":72,"date":"2024-01-06T20:19:40","date_gmt":"2024-01-06T20:19:40","guid":{"rendered":"https:\/\/vladyslavbondarenko.com\/?page_id=72"},"modified":"2024-01-06T20:19:40","modified_gmt":"2024-01-06T20:19:40","slug":"resources","status":"publish","type":"page","link":"https:\/\/vladyslavbondarenko.com\/?page_id=72","title":{"rendered":""},"content":{"rendered":"

Published Resources and Data<\/p>\n\n\n

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Machine learning model for 3D segmentation of cell membranes<\/strong> in the mouse embryo: 10.5281\/zenodo.6384845<\/a>
The model performs on light-sheet microcopy data. <\/em><\/p><\/div>\n<\/div>\n\n\n\n

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Machine learning model for 3D<\/strong> segmentation of cell nuclei<\/strong> in the mouse embryo: 10.5281\/zenodo.6383429<\/a>
The model performs on confocal microscopy data.<\/em><\/p><\/div>\n<\/div>\n\n\n

Raw ground-truth datasets for training and validation of the 3D segmentation model: https:\/\/zenodo.org\/records\/6546550<\/a>

Code: https:\/\/github.com\/kreshuklab\/mouse-embryo-seg<\/a><\/p>\n\n\n

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GSE228264<\/a><\/p><\/div>\n<\/div>\n\n\n

Raw single-cell RNA sequencing data from 4.5 days post fertilisation (d.p.f) (E4.5) and 5.25 d.p.f (E5.25) mouse embryos, dissected from the uterus, and day two (D2) and day three (D3) mouse embryos, grown in 3E-uterus.<\/p>\n\n

Source publication:
Bondarenko V<\/strong>, Nikolaev M, Kromm D, Belousov R, Wolny A, Blotenburg M, Zeller P, Rezakhani S, Hugger J, Uhlmann V, Hufnagel L, Kreshuk A, Ellenberg J, van Oudenaarden A, Erzberger A, Lutolf MP, Hiiragi T (2023). Embryo-uterine interaction coordinates mouse embryogenesis during implantation. <\/strong>EMBO J<\/em>; 42 (issue 17): e113280.<\/p>\n\n\n

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Impressum and Intellectual Property Clause<\/strong><\/p>\n\n\n